Bioinformatics and Functional Genomics

(second edition)

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Chapter 13: Completed Genomes and
the Tree of Life

This page offers the web documents and resources related to Chapter 13.

Web documents Description
Web Document 13-1 Five perspectives on genomics: organizing principles for thinking about the field of genomics (and for preparing a project for a course on genomics in which each student picks a genome to study)
Web Document 13-2 Description of a project to study a gene in detail from a genomics perspective

Chapter 13 Resources
Powerpoint of the two introductory lectures (October 26, 2009 here as powerpoint or pdf; Wednesday October 28 as powerpoint or pdf)
Course site for Genomics (260.605, 2nd quarter 2009-2010). This companion site includes information such as the class schedule and assignments.
Reading assignment: paper by Webb Miller and colleagues (2004). Optional: 1969 paper on the five-kingdom system of the tree of life.
Computer lab (click for word document)(Friday, October 30, 2009 in W3017)
Key URLs: NCBI; European Bioinformatics Institute Integr8; UCSC Genome Browser; Ribosomal Database Project at Michigan State University; Pfam (Protein Family Database); MEGA phylogeny software.

This page updated January 29, 2010

©2008-2009 Dr. Jonathan Pevsner