Web document 17.2. Making a phylogenetic tree of the fungi
using 18S ribosomal RNA sequences.
[1] Visit the European SSRNA database (http://bioinformatics.psb.ugent.be/webtools/rRNA/)
and identify the accession numbers for a group of fungal 18S rRNA genes. Several
are presented on this webpage. A fragment from K. lactis is highlighted
in pink. An A. gossypi sequence (in pink font color) is a particular
outlier and may be excluded from further analyses.
[2] The bottom of the page includes a Debaryomyces hansenii
sequence in an alternate format.
>S.cerevisiae gi|2190509|emb|Z75578.1| S.cerevisiae 18S rRNA gene
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGC
AATTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTTCCTTTACTACA
TGGTATAACTGTGGTAATTCTAGAGCTAATACATGCTTAAAATCTCGACCCTTTGGAAGAGATGTATTTA
TTAGATAAAAAATCAATGTCTTCGGACTCTTTGATGATTCATAATAACTTTTCGAATCGCATGGCCTTGT
GCTGGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTTT
CAACGGGTAACGGGGAATAAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGA
AGGCAGCAGGCGCGCAAATTACCCAATCCTAATTCAGGGAGGTAGTGACAATAAATAACGATACAGGGCC
CATTCGGGTCTTGTAATTGGAATGAGTACAATGTAAATACCTTAACGAGGAACAATTGGAGGGCAAGTCT
GGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTA
GTTGAACTTTGGGCCCGGTTGGCCGGTCCGATTTTTTCGTGTACTGGATTTCCAACGGGGCCTTTCCTTC
TGGCTAACCTTGAGTCCTTGTGGCTCTTGGCGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAA
AGCAGGCGTATTGCTCGAATATATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTT
TCTAGGACCATCGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC
TTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCAAGAACGAAAG
TTAGGGGATCGAAGATGATCAGATACCGTCGTAGTCTTAACCATAAACTATGCCGACTAGGGATCGGGTG
GTGTTTTTTTAATGACCCACTCGGCACCTTACGAGAAATCAAAGTCTTTGGGTTCTGGGGGGAGTATGGT
CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGAC
TCAACACGGGGAAACTCACCAGGTCCAGACACAATAAGGATTGACAGATTGAGAGCTCTTTCTTGATTTT
GTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAG
ACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAGAGGGACTATCGGTTTCA
AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGACGTTCTGGGCCGCACGCGCGCTAC
ACTGACGGAGCCAGCGAGTCTAACCTTGGCCGAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGG
GGATAGAGCATTGTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTG
ATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGTGAGGCCTCAGG
ATCTGCTTAGAGAAGGGGGCAACTCCATCTCAGAGCGGAGAATTTGGACAAACTTGGTCATTTAGAGGAA
CTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA
>S.paradoxus gi|2117295|emb|X97806.1| S.paradoxus 18S rRNA gene
CTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGCAAT
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTTCCTTTACTACATGG
TATAACTGTGGTAATTCTAGAGCTAATACATGCTTAAAATCTCGACCCTTTGGAAGAGATGTATTTATTA
GATAAAAAATCAATGTCTTCGGACTCTTTGATGATTCATAATAACTTTTCGAATCGCATGGCCTTGTGCT
GGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTTTCAA
CGGGTAACGGGGAATAAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGG
CAGCAGGCGCGCAAATTACCCAATCCTAATTCAGGGAGGTAGTGACAATAAATAACGATACAGGGCCCAT
TCGGGTCTTGTAATTGGAATGAGTACAATGTAAATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGT
GCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTT
GAACTTTGGGCCCGGTTGGCCGGTCCGATTTTTTCGTGTACTGGATTTCCAACGGGGCCTTTCCTTCTGG
CTAACCTTGAGTCCTTGTGGCTCTTGGCGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC
AGGCGTATTGCTCGAATATATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCT
AGGACCATCGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTG
GATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCAAGAACGAAAGTTA
GGGGATCGAAGATGATCAGATACCGTCGTAGTCTTAACCATAAACTATGCCGACTAGGGATCGGGTGGTG
TTTTTTTAATGACCCACTCGGCACCTTACGAGAAATCAAAGTCTTTGGGTTCTGGGGGGAGTATGGTCGC
AAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCA
ACACGGGGAAACTCACCAGGTCCAGACACAATAAGGATTGACAGATTGAGAGCTCTTTCTTGATTTTGTG
GGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAGACC
TTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAGAGGGACTATCGGTTTCAAGC
CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACT
GACGGAGCCAGCGAGTCTAACCTTGGCCGAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGA
TAGAGCATTGTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATT
ACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGTGAGGCCTCAGGATC
TGCTTAGAGAAGGGGGCAACTCCATCTCAGAGCGGAGAATTTGGACAAACTTGGTCATTTAGAGGAACTA
AAAGTCGTAACAAGGTTTCCN
>S.miatae gi|7592664|dbj|AB040998.1| Saccharomyces mikatae gene for 18S rRNA
AGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGCAATTTATACAGTGAAACTGCG
AATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTTCCTTTACTACATGGTATAACTGTGGTAATTCT
AGAGCTAATACATGCTTAAAATCTCGACCCTTTGGAAGAGATGTATTTATTAGATAAAAAATCAATGTCT
TCGGACTCTTTGATGATTCATAATAACTTTTCGAATCGCATGGCCTTGTGCTGGCGATGGTTCATTCAAA
TTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTTTCAACGGGTAACGGGGAATAAG
GGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTA
CCCAATCCTAATTCAGGGAGGTAGTGACAATAAATAACGATACAGGGCCCATTCGGGTCTTGTAATTGGA
ATGAGTACAATGTAAATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAAT
TCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACTTTGGGCTCGGTTG
GCCGGTCCGATTTTTTCGTGTACTGGATTTCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTTGT
GGCTCTTGGCGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATA
TATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACCATCGTAATGATT
AATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC
TACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCGAAGATGATCA
GATACCGTCGTAGTCTTAACCATAAACTATGCCGACTAGGGATCGGGTGGTGTTTTTTTAATGACCCACT
CGGCACCTTACGAGAAATCAAAGTCTTTGGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGG
AATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTCACCA
GGTCCAGACACAATAAGGATTGACAGATTGAGAGCTCTTTCTTGATTTTGTGGGTGGTGGTGCATGGCCG
TTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAGACCTTAACCTACTAAATAGTG
GTGCTAGCATTTGCTGGTTATCCACTTCTTAGAGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCA
ATAACAGGTCTGTGATGCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCT
AACCTTGGCCGAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATT
GCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA
CACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGTGAGGCCTCAGGATCTGCTTAGAGAAGGGGGCA
ACTCCATCTCAGAGCGGAGAATTTGGACAAACTTGGTCATTTAGAGGAACTAAAAGTCGTAACAAGGTTT
CCGTA
>S.bayanus gi|2117292|emb|X97777.1| S.bayanus 18S rRNA gene
CTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGCAAT
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTTCCTTTACTACATGG
TATAACTGTGGTAATTCTAGAGCTAATACATGCTTAAAATCTCGACCCTTTGGAAGAGATGTATTTATTA
GATAAAAAATCAATGTCTTCGGACTCTTTGATGATTCATAATAACTTTTCGAATCGCATGGCCTTGTGCT
GGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTTTCAA
CGGGTAACGGGGAATAAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGG
CAGCAGGCGCGCAAATTACCCAATCCTAATTCAGGGAGGTAGTGACAATAAATAACGATACAGGGCCCAT
TCGGGTCTTGTAATTGGAATGAGTACAATGTAAATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGT
GCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTT
GAACTTTGGGCCCGGTTGGCCGGTCCGATTTTTTCGTGTACTGGATTTCCAACGGGGCCTTTCCTTCTGG
CTAACCTTGAGTCCTTGTGGCTCTTGGCGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC
AGGCGTATTGCTCGAATATATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCT
AGGACCATCGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTG
GATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCAAGAACGAAAGTTA
GGGGATCGAAGATGATCAGATACCGTCGTAGTCTTAACCATAAACTATGCCGACTAGGGATCGGGTGGTG
TTTTTTTAATGACCCACTCGGCACCTTACGAGAAATCAAAGTCTTTGGGTTCTGGGGGGAGTATGGTCGC
AAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCA
ACACGGGGAAACTCACCAGGTCCAGACACAATAAGGATTGACAGATTGAGAGCTCTTTCTTGATTTTGTG
GGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAGACC
TTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAGAGGGACTATCGGTTTCAAGC
CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACT
GACGGAGCCAGCGAGTCTAACCTTGGCCGAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGA
TAGAGCATTGTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATT
ACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGTGAGGCCTCAGGATC
TGCTTAGAGAAGGGGGCAACTCCATCTCAGAGCGGAGAATTTGGACAAACTTGGTCATTTAGAGGAACTA
AAAGTCGTAACAAGGTTTCCN
>C.glabrata gb|AY198398.1|:1360-3159 Candida glabrata strain CBS 138 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 25S ribosomal RNA gene, partial sequence
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGC
AATTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTTCCTTTACTACA
TGGTATAACTGTGGTAATTCTAGAGCTAATACATGCTTAAAATCTCGACCTCTTGGAAGAGATGTATTTA
TTAGATAAAAAATCAATGTCTTCGGACTTTTTGATGATTCATAATAACTTTTCGAATCGCATGGCCTTGT
GCTGGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTTT
CAACGGGTAACGGGGAATAAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGA
AGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACGATACAGGGCC
CATTCGGGTCTTGTAATTGGAATGAGTACAATGTAAATACCTTAACGAGGAACAATTGGAGGGCAAGTCT
GGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTA
GTTGAACTTTGGGCCTGGGTGGCCGGTCCGATTTTTTCGTGTACTGGAATGCACCCGGGCCTTTCCTTCT
GGCTAACCCCAAGTCCTTGTGGCTTGGCGGCGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAA
AGCAGGCGTATTGCTCGAATATATTAGCATGGAATAATGGAATAGGACGTTTGGTTCTATTTTGTTGGTT
TCTAGGACCATCGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC
TTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCAAGAACGAAAG
TTAGGGGATCGAAGATGATCAGATACCGTCGTAGTCTTAACCATAAACTATGCCGACTAGGGATCGGGTG
GTGTTTTTTTAGTGACCCACTCGGCACCTTACGAGAAATCAAAGTCTTTGGGTTCTGGGGGGAGTATGGT
CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGAC
TCAACACGGGGAAACTCACCAGGTCCAGACACAATAAGGATTGACAGATTGAGAGCTCTTTCTTGATTTT
GTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAG
ACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTGTCCACTTCTTAGAGGGACTATCGGTTTCA
AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGACGTTCTGGGCCGCACGCGCGCTAC
ACTGACGGAGCCAGCGAGTCTAACCTTGGCCGAGAGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGG
GGATAGAGCATTGTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTG
ATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGTGAGGCCTCAGG
ATCTGCTTAGAAGAGGGGGCGACTCCACTTCAGAGCGGAGAATCTGGTCAAACTTGGTCATTTAGAGGAA
CTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA
>S.castellii gi|2190508|emb|Z75577.1| S.castellii 18S rRNA gene
TCAAAGATTAAGCCATGCATGTCTAAGTATAAGCAATTTATACAGTGAAACTGCGAATGGCTCATTAAAT
CAGTTATCGTTTATTTGATAGTTCCTTTACTACATGGTATAACTGTGGTAATTCTAGAGCTAATACATGC
TTAAAATCTCGACCTTTTGGAAGAGATGTATTTATTAGATAAAAAATCAATGTCTTCGGACTCTTTGATG
ATTCATAATAACTTTTCGAATCGCATGGCCTTGTGCTGGCGATGGTTCATTCAAATTTCTGCCCTATCAA
CTTTCGATGGTAGGATAGTGGCCTACCATGGTTTCAACGGGTAACGGGGAATAAGGGTTCGATTCCGGAG
AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTAATTCA
GGGAGGTAGTGACAATAAATAACGATACAGGGCCCATTCGGGTCTTGTAATTGGAATGAGTACAATGTAA
ATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGC
GTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACTTTGGGCCTGGTTGGCCGGTCCGATTTTT
TCGTGTACTGGATTCCAACCGGGCCTTTCCTTCTGGCTAACCTTGGGTCCTTGTGGCCCTTGGCGAACCA
GGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATATATTAGCATGGAATAA
TAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACCATCGTAATGATTAATAGGGACGGTCGGG
GGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTT
GCCAAGGACGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCGAAGATGATCAGATACCGTCGTAGTCT
TAACCATAAACTATGCCGACTAGGGATCGGGTGGTGTTTTTTTAATGACCCACTCGGCACCTTACGAGAA
ATCAAAGTCTTTGGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCA
CCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACACAATAA
GGATTGACAGATTGAGAGCTCTTTCTTGATTTTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAG
TGATTTGTCTGCTTAATTGCGATAACGAACGAGACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTG
GTCGTCCACTTCTTAGAGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT
GCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTAACCTTGGCCGAGAGG
TCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTTCAACGAGGAA
TTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCT
AGTACCGATTGAATGGCTTAGTGAGGCCTCAGGATCTGCTTAGAGAAGGGGGCAACTCCATCTCAGAGCG
GAGAATTTGGTCAAACTTGGTCATTTAGAGGAACTAAAAGTCGTAACAAGGTTT
>K.lactis_frag gi|1702823|dbj|D83431.1| Kluyveromyces lactis 18S ribosomal RNA, partial sequence
GGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTAACCTTGGCCGAGAGGTCTTGGTAATCTTGT
GAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCA
AGTCATCAGCTTGCGTTGATTACGTCCC
>A.gossypii gi|154968224:443575-445369 Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence
TAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTTTAGTTCCTCTAAATGACCAAGTT
TGACCAGATTTTCCGCTCTGAGGTGGAGTTGCCCCCTCCTCTAAGCAGATCCTGAGGCCTCACTAAGCCA
TTCAATCGGTACTAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAATCAACGCAAGCTGATGACTTG
CGCTTACTAGGAATTCCTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTCAC
AAGATTACCCAGACCTCTCGGCCAAGGTTATACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAG
AACGTCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTTGAAACCGATAGTCCCTCTA
AGAAGTGCGCAACCAGCAAATGCTAGCAGCACTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATTA
AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAAGAGCTCTC
AATCTGTCAATCCTTATTGTGTCTGGACCTGGTGAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCT
CCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCAGAACC
CAAAGACTTTGATTTCTCGTAAGGTGCCGAGTGGGTCATAAGAAAACACCACCCGATCCCTAGTCGGCAT
AGTTTATGGTTAAGACTACGACGGTATCTGATCATCTTCGATCCCCTAACTTTCGTTCTTGATTAATGAA
AACGTCCTTGGCAAATGCTTTCGCAGTAGTTAGTCTTCAATAAATCCAAGAATTTCACCTCTGACAATTG
AATACTGATGCCCCCGACCGTCCCTATTAATCATTACGATGGTCCTAGAAACCAACAAAATAGAACCAAA
CGTCCTATTCCATTATTCCATGCTAATATATTCGAGCTTGCGCCTGCTTTGAACACTCTAATTTTTTCAA
AGTAAAAGTCCTGGTTCGCCTAGAGTACAAGTACCCTAGGTTAGCCAGAAGGAAAGGTTCGGTTGGATCC
CGTACACGAAGAAAATCGGACGGGCCAACCAAACCCAAAGTTCAACTACGAGCTTTTTAACTGCAACAAC
TTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATTGTTCCTC
GTTAAGGTATTTACATTGTACTCATTCCAATTACAAGACCCGTATGGGCCCTGTATCGTTATTTATTGTC
ACTACCTCCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT
CAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTAGGCCACTATCCTA
CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCACAAGGCCATGCGATTCGAAAAGT
TATTATGAATCATCAAAGAGTCCGAAGACATTGATTTTTTATCTAATAAATACATCTCTTCCAAAAGGTC
GAGATTTTAAGCATGTATTAGCTCTAGAATTACCACAGATATCCATGTAGTAAAGGAACTATCAAATAAA
CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAAATTGCTTATACTTAGACATGCATGGCTT
AATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGATA
>C.albicans gi|4512045|gb|AF114470.1|AF114470 Candida albicans 18S ribosomal RNA gene, complete sequence
TCAGTTATCGTTTATTTGATAGTACCTTACTACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCT
TAAAATCCCGACTGTTTGGAAGGGATGTATTTATTAGATAAAAAATCAATGCCTTCGGGCTCTTTGATGA
TTCATAATAACTTTTCGAATCGCATGGCCTTGTGCTGGCGATGGTTCATTCAAATTTCTGCCCTATCAAC
TTTCGATGGTAGGATAGTGGCCTACCATGGTTTCAACGGGTAACGGGGAATAAGGGTTCGATTCCGGAGA
GGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGG
GGAGGTAGTGACAATAAATAACGATACAGGGCCCTTTTGGGTCTTGTAATTGGAATGAGTACAATGTAAA
TACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAAAGCG
TATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACCTTGGGCTTGGCTGGCCGGTCCATCTTTTT
GATGCGTACTGGACCCAGCCGAGCCTTTCCTTCTGGGTAGCCATTTATGGCGAACCAGGACTTTTACTTT
GAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATATATTAGCATGGAATAATAGAATAGGACGTT
ATGGTTCTATTTTGTTGGTTTCTAGGACCATCGTAATGATTAATAGGGACGGTCGGGGGTATCAGTATTC
AGTTGTCAGAGGTGAAATTCTTGGATTTACTGAAGACTAACTACTGCGAAAGCATTTACCAAGGACGTTT
TCATTAATCAAGAACGAAAGTTAGGGGATCGAAGATGATCAGATACCGTCGTAGTCTTAACCATAAACTA
TGCCGACTAGGGATCGGTTGTTGTTCTTTTATTGACGCAATCGGCACCTTACGAGAAATCAAAGTCTTTG
GGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGG
AGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACACAATAAGGATTGACAGATT
GAGAGCTCTTTCTTGATTTTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCT
TAATTGCGATAACGAACGAGACCTTAACCTACTAAATAGTGCTGCTAGCATTTGCTGGTATAGTCACTTC
TTAGAGGGACTATCGACTTCAAGTCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGACGT
TCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTATAAGCCTTGGCCGAGAGGTCTGGGAAATC
TTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTGTTGCTCTTCAACGAGGAATTCCTAGTAAG
CGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTG
AATGGCTTAGTGAGGCCTCCGGATTGGTTTAGGAAAGGGGGCAACTNCATTCTGGAACCGAGAAGCTGGT
CAAACTTGGTCATTTAGAGGAA
>K.waltii gi|1914790|emb|X89527.1| K.waltii DNA for 18S ribosomal RNA
CTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGCAAT
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTTCCTTTACTACATGG
TATAACTGTGGTAATTCTAGAGCTAATACATGCTTAAAATCTCGACCTTTTGGAAGAGATGTATTTATTA
GATAAAAAATCAATGTCTTCGGACTCTATGATGATTCATAATAACTTTTCGAATCGCATGGCCTTGTGCT
GGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTTTCAA
CGGGTAACGGGGAATAAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGG
CAGCAGGCGCGCAAATTACCCAATCCTAATTCAGGGAGGTAGTGACAATAAATAACGATACAGGGCCCAT
TCGGGTCTTGTAATTGGAATGAGTACAATGTAAATACCTTAACGAGGAACAATTGGAGGGCAAGTCTGGT
GCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTT
GAACTTTGGGCTTGGCTGGCCGGTCCGATTTTTTTCGTGTACTGGATCCAGCCGAGCCTTTCCTTCTGGC
TAACCTTGGGTCACTTGTGGCCCTTGGCGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC
AGGCGTATTGCTCGAATATATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCT
AGGACCATCGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAGNNGNCAGAGGTGAAATTCTTG
GATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCAAGAACGAAAGTTA
GGGGATCGAAGATGATCAGATACCGTCGTAGTCTTAACCATAAACTATGCCGACTAGGGATCGGGTGGTG
TTTTTTTAATGACCCACTCGGCACCTTACGAGAAATCAAAGTCTTTGGGTTCTGGGGGGAGTATGGTCGC
AAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCA
ACACGGGGAAACTCACCAGGTCCAGACACAATAAGGATTGACAGATTGAGAGCTCTTTCTTGATTTTGTG
GGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAGACC
TTAACCTACTAAATAGTGCTGCTAGCATTTGCTGGTTTGTCACTTCTTAGAGGGACTATCGGTTTCAAGC
CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACT
GACGGAGCCAGCGAGTACAACCTTGGCCGAGAGGTCTGGGTAAACTTGTGAAACTCCGTCGTGCTGGGGA
TAGAGCATTGTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATT
ACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGTGAGGCCTCAGGATT
TGCTTAGAGAAGGGGGCAACTCCATCTCAGAGCGGAGAATCTGGTCAAACTTGGTCATTTAGAGGAACTA
AAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA
>Y.lipolytica gi|57864413|dbj|AB018158.2| Yarrowia lipolytica gene for 18S rRNA, partial sequence
AGTCATATGCTTGTCTCAAAGACTAAGCCATGCATGTCTAAGTATAAACAATTATACAGTGAAACTGCGA
ACGGCTCATTAAATCAGTTATCGTTTATTTGATAGTTTTCTACATGGATAACCGTGATAACTTCAGAACT
AATACATGACAGCCTTCTGGCGTATATATTAGATACAAACCAACAGTATGGTGATTCATAATATCTTGTC
GAACCGATCTTCGGTGTATCATTCAAATTTCTGCCCTATCAACTGTCGATGGTAGGATCGTGGCCTACCA
TGGTAACAACGGGTAACGGGGAATCAGGGTTCTATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATC
CAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACAGGGAGGTAGTGACAATATATAACGATCC
GGGGCTCTTTGAGTTTCGGAATTGGAATGAGTACAATTTAAACACCTTAACGAGGAACAATTGGAGGGCA
AGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAATGTTGTTGCAGTTAAAAAGC
TCGTAGTTGAAATTGGGCGGGCTATTAGTTTAGGCCGCTTCAGGAAGAACTTCTTCCAGTTACTTTGAAA
AAATTAGAGTGTTCAACGCAGGTTTCGCCTGAATATATTAGCATGGAATAACATAACACGACGAGGGTCC
ATTTTGTTGGCTTGCAAACCCACGTAATGATTAATAGGGACAGTCGGGGGCGTCAGTATTGTGTTGTCAG
AGGTGAAATTCTTGGATTTACACAAGACTAACTACTGCGAAGCATTCGCCAAGGATGTATTCATTAATCA
AGAACGAAAGTTAGGGGATCAAAGATGATCAGATACCGTCGTAGTCTTAACCGTAAACTATGCCGACTGA
GAATGGGTACCGCTTATACGGTATCCGCGCTCTACGAGAAATCAAAGTGATCAGGTTCTGGGGGGAGTAT
GGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGGACTGCGGCTTAATTTG
ACTCAACACGGGGAAACTCACCAGGTCCAGACACAATAAGGATTGACAGATTGATAGCTCTTTCTTGATT
TTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACG
AGACCTTGACCTACTAAATAGCTCTACNNCGATTGCAGGTAGCTAGCTTCTTAGAGGGACTATCTATTAC
AAGTAGATGGAAGTTCGAGGCAATAACAGGTCTGTGATGCCCTTAGACGTTCTGGGCCGCACGCGCGCTA
CACTGACGGAGCCAGCGAGTCGACCAAGCCCGAGAGGGCTAGGTAATCTTGTGAAACTCCGTCGTGCTGG
GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTG
ATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGTGAGACCTTGGG
AGGGCGAGATGAGGGGGGCAACCCCTTTTGAACATCCAAACTTGGTCAAACTTGATTATTTAGAGGAAGT
AAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGG
>M.grisea dbj|AB026819.1|:394-2191 Magnaporthe grisea genes for 18S rRNA, 5.8S rRNA, 26S rRNA, complete sequence, rDNA repeat unit sequence
TACCTGGTTGATTCTGCCAGTAGTCATATGCTTGTCTTAAAGATTAAGCCATGCATGTCTAAGTATAAGC
AATTATACAGCGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTACCTTACTACATG
GATAACCGTGGTAATTCTAGAGCTAATACATGCTAAAAACCCCGACTTCGGAAGGGGTGTATTTATTAGA
TTAAAAACCAATGCCCTTCGGGGCTCACTGGTGATTCATGATAACTTCTCGAATCGCACGGCCTTGCGCC
GGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGACGGCTGGGTCTTGGCCAGCCGTGGTGACAA
CGGGTAACGGAGGGTTAGGGCTCGACCCCGGAGAAAACGCCTGAGAAACGGCGTTTACATCCAAGGAAGG
CAGCAGGCGCGCAAATTACCCAATGCCGACACGGCGAGGTAGTGACGAGAAATACTGATACAGGGCTCTT
TTGGGTCTTGTAATTGGAATGAGTACAATTTAAATCTCTTAACGAGGAACAATTGGAGGGCAAGTCTGGT
GCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTT
GAACCTTGGGCCTGGCTGGCCGGTCCGCCTCACCGCGTGCACTGGTCCGGCCGGGCCTTTCCCTCTGGGG
AACCGCATGCCCTTCACTGGGCGTGTCGGGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAA
GCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTC
TAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTT
GGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGGAACGAAAGTT
AGGGGATCGAAGACGATCAGATACCGTCGTAGTCTTAACCATAAACTATGCCGACTAGGGATCGGACGGT
GTTATTTTTTGACCCGTTCGGCACCTTACACGAAAGTACAAGTTTCTGGGTTCTGGGGGGAGTATGGTCG
CAAGGCTGAAACTTAAAGAAATTGACGGAAGGGCACCACCAGGGGTGGAGCCTGCGGCTTAATTTGACTC
AACACGGGGAAACTCACCAGGTCCAGACATGAAAAGGATTGACAGATTGAGAGCTCTTTCTTGATTTTAT
GGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAGAC
CTTAACCTGCTAAATAGCCCGCGTCGCTTTGGCGGCGCGCCGGCTTCTTAGAGGGACTATCGGCTCAAGC
CGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT
GACACAGCCAGCGAGTCCTTCCTTGGCCGAGAGGCCCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGA
TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATT
ACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGGCTCAGTGAGGCCTTCGGACT
GGCCGAGAGAGGTGGGCAACCACCACTCATGTGCCGGAAAGTTGTACGAACTCGGTCGTTTAGAGGAAGT
AAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTA
>A.nidulans gi|469085|emb|X78539.1| A.nidulans (isolate CBS100.20) 18S rRNA gene
AAGTATAAGCAATCTATACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTAC
CTTACTACATGGATACCTGTGGTAATTCTAGAGCTAATACATGCTAAAAACCCCGACTTCGGGAGGGGTG
TATTTATTAGATAAAAAACCAATGCCCCTCGGGGCTCCTTGGTGATTCATAATAACTTAACGAATCGCAT
GGCCTTGCGCCGGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGTGGCCTAC
CATGGTGGCAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACA
TCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAACCGACACGGGGAGGTAGTGACAATAAATACTGATAC
GGGGCTCTTTTGGGTCTCGTAATTGGAATGAGAACAATTTAAATCCCTTAACGAGGAACAATTGGAGGGC
AAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAG
CTCGTAGTTGAACCTTGGGTCTGGCTGGCCGGTCCGCCTCACCGCGAGTACTGGTCCGGCTGGACCTTTC
CTTCTGGGGAACCCCATGGCCTTCACTGGCTGTGGGGGGAACCAGGACTTTTACTGTGAAAAAATTAGAG
TGTTCAAAGCAGGCCTTTGCTCGGATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG
TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGCGTCAGTATTCAGCTGTCAGAGGTG
AAATTCTTGGATTTGCTGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAGGGA
ACGAAAGTTAGGGGATCGAAGACGATCAGATACCGTCGTAGTCTTAACCATGAACTATGCCGACTAGGGA
TCGGGCGGCGTTTCTTTTATGACCCGCTCGGCACCTTACGAGAAATCAAAGTTTTTGGGTTCTGGGGGGA
GTATGGTCGCAAGGCTGAAACTTAAAGAAATTGACGGAAGGGCACCACAAGGCGTGGAGCCTGCGGCTTA
ATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACAAAATAAGGATTGACAGATTGAGAGCTCTTTCT
TGATCTTTTGGATGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAAC
GAACGAGACCTCGGCCCTTAAATAGCCCGGTCCGCGTCCGCGGGCCGCTGGCTTCTTAGGGGGACTATCG
CCTCAAGCCGATGGAAGTGCGCGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC
GCTACACTGACAGGGGCAGCGAGTACATCACCTTGGTCCGAGAGGCCCGGGTAATCTTGTTAAACCCTGT
CGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAGGCACGAGTCATCAGC
TGCTGCCGATTACGTCCCTGCCCTTTGTACACACCGCCTGTCGCTACTACCGATTGAATGGCTCGGTGAG
GCCTCNGGACTGNCTCAGGAGGGTTGGCAACGACNCCCCAGAGCCGGAAAGCTGGTTAAACCCG
>G.zeae dbj|AB250414.1|:1-1747 Gibberella zeae genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, strain: NBRC 9462
CATGCATGTCTAAGTATAAGCAATTATACAGCGAAACTGCGAATGGCTCATTATATAAGTTATCGTTTAT
TTGATAGTACCTTACTACTTGGATAACCGTGGTAATTCTAGAGCTAATACATGCTAAAAATCCCGACTTC
GGAAGGGATGTATTTATTAGATTAAAAACCAATGCCCTCCGGGGCTCACTGGTGATTCATGATAACTCCT
CGAATCGCATGGCCTTGCGCCGGCGATGGTTCATTCAAATTTCTTCCCTATCAACTTTCGATGTTTGGGT
ATTGGCCAAACATGGTTGCAACGGGTAACGGAGGGTTAGGGCTCGACCCCGGAGAAGGAGCCTGAGAAAC
GGCTACTACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGGGGAGGTAGTGACAAT
AAATACTGATACAGGGCTCTTTTGGGTCTTGTAATTGGAATGAGTACAATTTAAATCCCTTAACGAGGAA
CAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTT
GTGGTTAAAAAGCTCGTAGTTGAACCTTGGGCCTGGCTGGCCGGTCCGCCTCACCGCGTGTACTGGTCCG
GCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGCGTGGCGGGGAAACAGGACTTTTACTGT
GAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTG
TGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCA
ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTT
CATTAATCAGGAACGAAAGTTAGGGGATCGAAGACGATCAGATACCGTCGTAGTCTTAACCATAAACTAT
GCCGACTAGGGATCGGACGGTGTTATTTTTTGACCCGTTCGGCACCTTACGAGAAATCAAAGTGCTTGGG
CTCCAGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGAAATTGACGGAAGGGCACCACCAGGGGTGGAG
CCTGCGGCTTAATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACACAATGAGGATTGACAGATTGA
GAGCTCTTTCTTGATTTTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTA
ATTGCGATAACGAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTA
GAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG
GGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTTCCTTGTCCGAAAGGTCCGGGTAATCTTGTT
AAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAA
GTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGG
CTCAGTGAGGCGTCCGGACTGGCCCAGAGTGGTGGGCAACTACCGCTCAGGGCCGGAAAGCTCTCCAAAC
TCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTA
>N.crassa gi|3080|emb|X04971.1| Neurospora crassa DNA for small subunit ribosomal RNA
TACCTGGTTGATTCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTTTAAGC
AATTAAACCGCGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTATTTGATAGTACCTTACTACATG
GATAACCGTGGTAATTCTAGAGCTAATACATGCTAAAAACCCCGACTTCGGAAGGGGTGTATTTATTAGA
TTAAAAACCAATGCCCTTCGGGGCTAACTGGTGATTCATAATAACTTCTCGAATCGCATGGCCTTGCGCT
GGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGACGGCTGGGTCTTGGCCAGCCATGGTGACAA
CGGGTAACGGAGGGTTAGGGCTCGACCCCGGAGAAGGAGCCTGAGAAACGGCTACTACATCCAAGGAAGG
CAGCAGGCGCGCAAATTACCCAATCCCGACACGGGGAGGTAGTGACAATAAATACTGATACAGGGCTCTT
TTGGGTCTTGTAATTGGAATGAGTACAATTTAAATCCCTTAACGAGGAACAATTGGAGGGCAAGTCTGGT
GCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGAGGTTAAAAAGCTCGTAGTT
GAACCTTGGGCTCGGCCGTCGGTCCGCCTCACCGCGTGCACTGACTGGGTCGGGCCTTTTTTCCTGGAGA
ACCGCATGCCCTTCACTGGGTGTGTCGGGGAACCAGGACTTTTACCGTGAACAAATCAGATCGCTCAAAG
AAGGCCTATGCTCGAATGTACTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCT
AGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTG
GATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGGAACGAAAGTTA
GGGGATCGAAGACGATCAGATACCGTCGTAGTCTTAACCATAAACTATGCCGATTAGGGATCGGACGGTG
TTATTTTTTGACCCGTTCGGCACCTTACGATAAATCAAAATGTTTGGGCTCCTGGGGGAGTATGGTCGCA
AGGCTGAAACTTAAAGAAATTGACGGAAGGGCACCACCAGGGGTGGAGCCTGCGGCTTAATTTGACTCAA
CACGGGGAAACTCACCAGGTCCAGACACGATGAGGATTGACAGATTGAGAGCTCTTTCTTGATTTCGTGG
GTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTGCGATAACGAACGAGACCT
TAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAGAGGGACTATCGGCTCAAGCCG
ATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA
CACAGCCAGCGAGTACTCCCTTGGCCGGAAGGTCCGGGTAATCTTGTTAAACTGTGTCGTGCTGGGGATA
GAGCATTGCAATTATTGCTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTAC
GTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGCTCAGTGAGGCTTCCGGACTGG
CCCAGGGAGGTCGGCAACGACCACCCAGGGCCGGAAAGCTATCCAAACTCGGTCATTTAGAGGAAGTAAA
AGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTA
>S.pombe gi|4893|emb|X58056.1| S.pombe gene for 18S ribosomal RNA
TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGC
AATTTTGTACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTGATAGTACCTCAACTAC
TTGGATAACCGTGGTAATTCTAGAGCTAATACATGCTAAAAATCCCGACTTTTTTGGAAGGGATGTATTT
ATTAGATAAAAAACCAATGCCTTCGGGCTTTTTTTGGTGAGTCATAATAACTTTTCGAATCGCATGGCCT
TGCGCGGCGATGGTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGAGGCCTACCATGGT
TTTAACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG
GAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGGGAGGTAGTGACAAGAAATAACAATGCAGGGC
CCTTTCGGGTCTTGTAATTGGAATGAGTACAATGTAAATACCTTAACGAGGAACAATTGGAGGGCAAGTC
TGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGT
AGTTGAACTTTGAGCCTGGTCGACTGGTCCGCCGCAAGGCGTGTTTACTGGTCATGACCGGGGTCGTTAA
CCTTCTGGCAAACTACTCATGTTCTTTATTGAGCGTGGTAGGGAACCAGGACTTTTACCTTGAAAAAATT
AGAGTGTTCAAAGCAGGCAAGTTTTGCTCGAATACATTAGCATGGAATAATAAAATAGGACGTGTGGTTC
TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGCATTCGTATTCAATTGTC
AGAGGTGAAATTCTTGGATTTATTGAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA
TCAAGAACGAAAGTTAGGGGATCGAAGACGATCAGATACCGTCGTAGTCTTAACCATAAACTATGCCGAC
TAGGGATCGGGCAATGTTTCATTTATCGACTTGCTCGGCACCTTACGAGAAATCAAAGTCTTTGGGTTCC
GGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACAATGGAGTGGAGCCT
GCGCTTAATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACATAGTAAGGATTGACAGATTGAGAGC
TCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGCTTAATTG
CGATAACGAACGAGACCTTAACCTGCTAAATAGCTGGATCAGCCATTTTGGCTGATCATTAGCTTCTTAG
AGGGACTATTGGCATAAAGCCAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG
GGCCGCACGCGCGCTACACTGACGGAGCCAACGAGTTGAAAAAAATCTTTTGATTTTTTATCCTTGGCCG
GAAGGTCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG
AGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGAATACGTCCCTGCCCTTTGTACACACCGCCCG
TCGCTACTACCGATTGAATGGCTTAGTGAGGCCTCTGGATTGGCTTGTTTCTGCTGGCAACGGCGGAAAC
ATTGCCGAGAAGTTGGACAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA
ACCTGCGGAAGGATCATTA
>seq:Debaryomyces hansenii var. hans AB013590
--------------------------------------------------------------------------------
--------------------------ooo[oo-ooo]o-----oo[o-ooo]-[o-ooAG]-U[AGU{-C}AUA--UGCU
]----[UGU-C]UC-A-AA---GAUUAA--[GC-C{A--}UGC]-A--U[GU{C-UA--A}GU{A-UAA}G-C]AA----
--------------------------------------------------------------------------------
-UUUAUA--C----------------------------------------------------------------------
-------------------------------------------------A[GU{--GAA}AC{-U}GC]G-AA--UGG-[
C-UC]-AUUA---AAU-[C-AG{--UU}AU{---CG}U-U{UA--UU}UG--A]-UAGUACC------------------
-------UUUA---------------------CU-ACU-[UG{G--AUAA}C-{CG}-UGG]-UAAU-U-[CU--A-{GA
}G{CUAAUA-}CA]-UGCUA-----------------AAA[AUC--CC{G----A}CU]---------------------
---------------------GUUU-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------[GG{A------A}GG-GAU]--------------------------------------GU
AU--[UU-AUUA{-GAUAA--AA--A}AUC{-AAU---------}GCU-U]-----------------------------
------------------------------UUCG----------------------------------------------
---[GA-GC{----------UCUUU-}-G-AU{---GA--UUCA}U--A-AUA-A]CUUUU-------------------
--C-GAA-[U-CGC{A--------}UGGC]--------------------------------------------------
----------------------------------------------------------------CUUG------------
--------------------------------------------------------------------------------
----------------U[GCU---GGCG--A]UG----------------------------------------------
GU[U-CA{UUC---}A-AA-U{UU-}CU-G]------C[CCU-(A)------U{C-----A-}ACU{UUC--G}AU-GG-
UA-GG(A)U]----AGU-[G(G)-CCUACCA-----UGGU{-U--UCA}A-(C)GGG]U------------AA[CGGG-G
AAU]-AAGG--[GUUC{-GAU}U-CC-G^GA-G]-A[GG-(G)AG-C]C-UGA-GAA-ACG[G-CU-(A)CC]A-[C(A)
UC]C-AA------G[G-A-(A)G]GC--A[GC-A-GGC]---GCGCAAA--[U{U}ACC{-C-AA}UCC-C]GA----CA
C---[GG-GG{A---}GGUA]G-U[GA-CA]-AUA-AAU-------AA[CGA---U--ACA-G-G-G---CCU]------
-----------------------------UUC---------------------------------[GGG-UCU-UG--UA
{A}UU-G]G-----------------------------------------AAUGA[GU]-AC-AAUGU--AAA-UA----
--------------------------------------------------------------------------------
-------------------------------------------------------CCUUA-[AC]GAG-G-AA--CAA[U
UGG-AG]-[GG-C]-AAG---U[C-UGG]U--G-CCAGC---A[GCC]GC-GG--UAAU--U[C----CAG^C-UCC-AA
]U[A-G-CGU-AUA-UU]AAAG-UUG--[UU(G)CA--G]UUA----AAAA[G(C)-U-C{GU-A}G-U-U]GAACCUU-
------[GGGCU----UGGUUG]------G[C-C-GGU{C}CG-CC]---------------------------------
-------------UUUUU-----------------------------------------------------[GGCG{---AG--------------U}ACUGG]-------AC---C-[C----AACCG-AGCCU]U--UC-------------------
-------------------------------------C-[UUCUGG]CU-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AA[CC{-UUU-}CG----CC]----CUUGU--------
[G-G-U--G{UUU--------}GG]----CGAA-----------------------[CCAGGA]----CUU[UUA]CU-U
UGAAAAAA----U[UA]-GA[GU]G--[UUCA]AA-[GC]A[GGC]------------------CU-UU-----------
--------[G--CU]---CGAA[UA]U--AUUAGCA[UGGA]A--[UAA^UAGAAU]-AGG--------------[ACG{UU--}AUG---G-UU-CU]-------------------------------------------------------------
--------------------------------------------------------------------------------
---------------[AUUUU---G]UUGG-UU---------------------UCU-[AG-GA-C---C--AU-CGU]A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----A-UG-AUU[AA{UA-}GGGA-C-G{GUC--GGG}GG-CA]------------UC[AG-U--{AU}U-CAG-U-UG
{--UC-A}GAG]-----GUGAAA-----[UUC{UUG-GAU}UAA-CUGA{-AG-}ACU]AACU-AC---U[GC]--GAAA
---[GC]A----UU[UGC-C{AAGGA}C-GUUU{U-}C-{A-}UU]----------------------------------
--------------------------------[AAU{-CAA---}GA-(A)C]GA--------AA[GU-UAGGG{-GAU-
}C{G-AA}G-AUG]-----AU-CA--GAUAC-----[C-GUC{-G-UA}GUCU-UA-AC]-CAU-AAAC-UAU[GCC{-G
}AC]U-[AGG{G--A}UCGGGU-GU{U-----}GU-U]CU----------------------------------------
-------------------------------------UUUU---------------------------------------
--------------------------------------------------------------------------------
-------------------------UU[GACG-C-ACU-CGG{C---A}CCU]-UAC---------[GA]-GAAA--[U-
C]-A----AA[GU{C-UUUG-}GGU]U-[CUG(G)--GG]G-G[AG-U{A---}UGG-UC]-GCA-A-[GGCU--G{AA}
AC-U]UAA[A------GGA]A-U[UG-AC{G}GAA--GGGC-A]---CCA-CCA--[G---G-A-GU]--GG[AG-C(C)
U-GC-GGC]--UU-AA---[UUU-G]-ACUCAA-CA-[C-GG-G]---GA-AAC-U-CA-[CC-AGG-(U)C]--CA-GA
-[CA--CA{-AUA-A----G}G-AUUGA(C)A-GA]U-UG-A--------------------------------------
--------------------------------------------------------------------------------
-------------------GA-GC[UCU(U)UC-{U--U}GA-UU{U----}UGUG]GG-----U[GG{-U}GG{UG-}C
A-UG-GCCG--UU-(C)UU]-A[GU-U]G---G-[UG-GA]--GUGA-[UUUG]U--[C{U}G-C]-UUAAUU-[GC-G]
AU-------AACG-[AA-C]GAG------AC[CUU-A]A--[CCU{-A}CUAA{-AU}A-GU-G{C-}U-G-CUA-----
----------GC]-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------UUUU--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--[GCUGGUA{U----------------------------------AG-U}CA--CU{U----C}U-U-AGAG-G]G--A
-CU-A[UCG----------A-U]-------------------UUCAA-----------[G-UCG-A]-UG--G--A--AG
UU--[U--GA-G]G-C[AA(U)-AAC{A--}GG-UC{-U-G--UG}A-UGC-CC-U]UAGA---C[G-(U)UC-UGG]-G
CC-[GC{A-}CGCG(C)G-CU]AC--ACU[G---AC-GGAG{C-CAA}C---GAG]UA----------------------
--------------------------------------------------------------------------------
---UUAA[CCU(U)--GGC-C]--GAGA-[G-GUC-(U)----GGG]----AAAU------[CUUG{-----UGAAA}CU
CC-GU-C]G-U-GCU-GG--------GGA-U-[AGA-GC]AU--------------------------------------
---------UG--UAAUU--AU-U[GCUC-U]U-----CAAC-GAGG-A[AUU-CC]UAG-UA[AG--CG----CA-AG]
-U---CAUCA----G-[CUU-GCGU-U]-GAUUAC-GUC-CC[U-GCCCUU-UGU{A-}CA]CACC-G--CCCG-UCG--
-C[U--AC-U(A)--C-C{GA--}U{U}--GAAUGGC{U-U}AG--U{GA-------}GG-CC{U-C}C{-GGA-}UUGG
-UUU(A)AAGA-(A)GGGG]------------------------------GCAA--------------------------
---------------------[CUCC---(A)-UC---------------UU-(G)G-AACCGA{-AAA}G{---C-U}G
G-UC{A--A}ACU--------{UG}G-UCA-UUUA{G--A}GG(A)AGU-A]A-AA-G-UCGU-AAC-AA-GG[UUU-CC
GU-AGG]UGAA-[CCU-GCG-GAAG]GAUCAUUA----------------------------------------------
------------------------------------------------------------------------*