Web document 2.2: Comparison of human alpha globin (RefSeq NM_000558) versions .1 versus .3.

Note that version NM_000558.3 is longer (576 nucleotides rather than 429).

BLAST 2 SEQUENCES RESULTS VERSION BLASTN 2.2.15 [Oct-15-2006]

Match: Mismatch: gap open: gap extension:
x_dropoff: expect: wordsize: Filter View option    
Masking character option     Masking color option    
Show CDS translation


Sequence 1: gi|4504346|ref|NM_000558.1|Homo sapiens hemoglobin, alpha 2 (HBA2) mRNA
Length = 429 (1 .. 429)

Sequence 2: gi|14456711|ref|NM_000558.3|Homo sapiens hemoglobin, alpha 1 (HBA1), mRNA
Length = 576 (1 .. 576)


 

2

1


NOTE:Bitscore and expect value are calculated based on the size of the nr database.

NOTE:If protein translation is reversed, please repeat the search with reverse strand of the query sequence.


 
 Score =  819 bits (426),  Expect = 0.0
 Identities = 428/429 (99%), Gaps = 0/429 (0%)
 Strand=Plus/Plus
 
Query  1    ATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGTCGGCGCG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  38   ATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGTCGGCGCG  97
 
Query  61   CACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCCCACCACC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  98   CACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCCCACCACC  157
 
Query  121  AAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGGTTAAGGGCCACGGC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  158  AAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGGTTAAGGGCCACGGC  217
 
Query  181  AAGAAGGTGGCCGACGCCCTGACCAACGCCGTGGCGCACGTGGACGACATGCCCAACGCG  240
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  AAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGACGACATGCCCAACGCG  277
 
Query  241  CTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAACTTCAAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  278  CTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAACTTCAAG  337
 
Query  301  CTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTTCACCCCT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  338  CTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTTCACCCCT  397
 
Query  361  GCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGACCTCCAAA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  398  GCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGACCTCCAAA  457
 
Query  421  TACCGTTAA  429
            |||||||||
Sbjct  458  TACCGTTAA  466