Web document 4.1. Examples of compositionally nonstandard proteins that are highly hydrophobic.
>gi|118723378|gb|ABL10376.1| small hydrophobic protein [Mumps virus]
MPAIHPPLYLTFLLLILLHLIINLYVWTMLTITHKTAVQHAALYQRSLFRWSFDHSL
>gi|66508432|ref|YP_238532.1| small hydrophobic protein [Tupaia rhabdovirus]
MITTLIIIGAAFLVGPRTFKFVLAYLLGYYNAFGPPLQIVQFMVWLIIIYFPKKFFSLGWYFCHDAFSSY
FGDPNGGQLPVSTKFHSLTDMID
>gi|62512172|sp|Q08828|ADCY1_HUMAN Adenylate cyclase type 1 (Adenylate cyclase type I) (ATP pyrophosphate-lyase 1) (Adenylyl cyclase 1) (Ca(2+)/calmodulin-activated adenylyl cyclase)
MAGAPRGGGGGGGGAGEPGGAERAAGTSRRRGLRACDEEFACPELEALFRGYTLRLEQAATLKALAVLSL
LAGALALAELLGAPGPAPGLAKGSHPVHCVLFLALLVVTNVRSLQVPQLQQVGQLALLFSLTFALLCCPF
ALGGPARGSAGAAGGPATAEQGVWQLLLVTFVSYALLPVRSLLAIGFGLVVAASHLLVTATLVPAKRPRL
WRTLGANALLFVGVNMYGVFVRILTERSQRKAFLQARSCIEDRLRLEDENEKQERLLMSLLPRNVAMEMK
EDFLKPPERIFHKIYIQRHDNVSILFADIVGFTGLASQCTAQELVKLLNELFGKFDELATENHCRRIKIL
GDCYYCVSGLTQPKTDHAHCCVEMGLDMIDTITSVAEATEVDLNMRVGLHTGRVLCGVLGLRKWQYDVWS
NDVTLANVMEAAGLPGKVHITKTTLACLNGDYEVEPGYGHERNSFLKTHNIETFFIVPSHRRKIFPGLIL
SDIKPAKRMKFKTVCYLLVQLMHCRKMFKAEIPFSNVMTCEDDDKRRALRTASEKLRNRSSFSTNVVYTT
PGTRVNRYISRLLEARQTELEMADLNFFTLKYKHVEREQKYHQLQDEYFTSAVVLTLILAALFGLVYLLI
FPQSVVVLLLLVFCICFLVACVLYLHITRVQCFPGCLTIQIRTVLCIFIVVLIYSVAQGCVVGCLPWAWS
SKPNSSLVVLSSGGQRTALPTLPCESTHHALLCCLVGTLPLAIFFRVSSLPKMILLSGLTTSYILVLELS
GYTRTGGGAVSGRSYEPIVAILLFSCALALHARQVDIRLRLDYLWAAQAEEEREDMEKVKLDNRRILFNL
LPAHVAQHFLMSNPRNMDLYYQSYSQVGVMFASIPNFNDFYIELDGNNMGVECLRLLNEIIADFDELMEK
DFYKDIEKIKTIGSTYMAAVGLAPTSGTKAKKSISSHLSTLADFAIEMFDVLDEINYQSYNDFVLRVGIN
VGPVVAGVIGARRPQYDIWGNTVNVASRMDSTGVQGRIQVTEEVHRLLRRCPYHFVCRGKVSVKGKGEML
TYFLEGRTDGNGSQIRSLGLDRKMCPFGRAGLQGRRPPVCPMPGVSVRAGLPPHSPGQYLPSAAAGKEA
>gi|755152|gb|AAB03362.1| highly hydrophobic integral membrane protein
MNDLLRILREQITSFPLILRLAAYETKSKYQMNYLGVLWQFLNPLIQMLAYWFVFGMGIRKGGPVTTGAG
EVPFIIWMLAGLIPWFFISPTILDGSNSVFKRINMVAKMNFPISSLPSVAIASNLFSYMIMMVIYIIVLL
VNGVFPSVHWLQYIYYFICMIAFMFSFSLFNSTISVLIRDYQFLLQAVTRLLFFLLPIFWDVNAKLGQSH
PELVPVLKLNPLFYIIEGFRNSFLDGAWFFHDMKYTLYFWLFTFLLLLVGSILHMKFRDKFVDFL
>gi|13093083|emb|CAC31469.1| probable ABC-transport protein, inner membrane component [Mycobacterium leprae]
MGIEKVKVTAGVRVGARRATIWVIIDTFVVGYALLPVLWILSLSLKPASTVKDGKLIPSLVTFDNYRGIF
RSDLFSSALINSIGIGLTTTVIAVMFGAMAAYAIARLAFPGKRLLVGTTLLVTMFPAISLVTPLFNIERR
VGLFDTWAGLILPYITFALPLAIYTLSAFFAEIPWDLEKAAKMDGATSGQAFRKVIVPLAAPGLVTAAIL
VFIFAWNDLLLALSLTSTKAAITAPVAITNFTGSSQFEEPTGSIAAGAIVITAPIIVFVWIFQRRIVAGL
TSGAVKG
>gi|21225115|ref|NP_630894.1| integral membrane efflux protein [Streptomyces coelicolor A3(2)]
MNSSAGHPRRWQILNILCLSLVLIGLDTLILNLALPSIQKDLDATSSQLQWMVDSYALAFGGLLLMAGGL
SDRFGRKRLLSVGLGAFALTSLGAAFASNAEMLITFRALMGISAALMMPATLAIIKDVFPREEQGKAIGI
WSGAAAVGVPLGPLVSGLLLEHFWWGSMFLINVPLAAIALIGGAKLIPESKAEGHPGLDLVGALLSVAGL
VAIVYGLVEAPHNGWGDIITLGSLFVGVVLMVAFVLWERKTAHPMLDVGLFLNARYGGGALAIACTSFGL
YSGLYLLTQYLQSVLELDPLGAGLRMLAIGTMMVGAPLSAKLVERTGLKATVVVGLLLCAAGLGVLAGLS
VDDETQALIGLAVFGLGMGIALPAAVDAILVVSAARQAGAGSAVADVGMQVGGALGIAISGSVIATLYRD
DLPQAAQLPGEAGEAVHESLAGASAVAQQLGGDTGRRVLDAAQQSFVGGFTGTLLIAVGVAAVGALAAAF
ILPRARVADEDGTAQSEAAARSDSADAAATS
>gi|6714654|emb|CAB66176.1| putative membrane protein. [Streptomyces coelicolor A3(2)]MLNALEVVTTVVVGVMVGVEFAVAFVMNPILNALPEDSRQLGHAHGGRMLGAVMPVWYIGSLVLVAIWAALGRHHHGTGLVVTAGALLILSVVMSILLLVPINNRNKTWTPENRPEDWKEQTQRWLRWHYVRLAVIGAAFALLATALT