Web document 5.6. Alignment of vertebrate globins for input into HMMER.
>chicken_alpha_globin gi|52138655|ref|NP_001004376.1| alpha 1 globin [Gallus gallus]
-MVLSAADKNNVKGIFTKIAGHAEEYGAETLERMFTTYPPTKTYFPHF------DLSHGS
AQIKGHGKKVVAALIEAANHIDDIAGTLSKLSDLHAHKLRVDPVNFKLLGQCFLVVVAIH
HPAALTPEVHASLDKFLCAVGTVLTAKYR------
>gi|6981010|ref|NP_037228.1| hemoglobin alpha 1 chain [Rattus norvegicus]
-MVLSADDKTNIKNCWGKIGGHGGEYGEEALQRMFAAFPTTKTYFSHI------DVSPGS
AQVKAHGKKVADALAKAADHVEDLPGALSTLSDLHAHKLRVDPVNFKFLSHCLLVTLACH
HPGDFTPAMHASLDKFLASVSTVLTSKYR------
>mouse_alpha_globin gi|6680175|ref|NP_032244.1| hemoglobin alpha 1 chain [Mus musculus]
-MVLSGEDKSNIKAAWGKIGGHGAEYGAEALERMFASFPTTKTYFPHF------DVSHGS
AQVKGHGKKVADALASAAGHLDDLPGALSALSDLHAHKLRVDPVNFKLLSHCLLVTLASH
HPADFTPAVHASLDKFLASVSTVLTSKYR------
>human_alpha_globin gi|4504347|ref|NP_000549.1| alpha 1 globin [Homo sapiens]
-MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGS
AQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH
LPAEFTPAVHASLDKFLASVSTVLTSKYR------
>chicken_beta_globin gi|71895591|ref|NP_001026660.1| hypothetical protein LOC428114 [Gallus gallus]
MVHWTAEEKQLITGLWGKV--NVAECGAEALARLLIVYPWTQRFFASFGNLSSATAIIGN
PMVRAHGKKVLSSFGEAVKNLDNIKKSFAQLSKLHCDKLHVDPENFRLLGDILIIVLASH
FSKDFTPASQAAWQKMVRVVAHALAHEYH------
>mouse_beta_globin gi|17647499|ref|NP_058652.1| hemoglobin, beta adult minor chain [Mus musculus]
MVHLTDAEKSAVSCLWAKV--NPDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGN
PKVKAHGKKVITAFNEGLKNLDNLKGTFASLSELHCDKLHVDPENFRLLGNAIVIVLGHH
LGKDFTPAAQAAFQKVVAGVATALAHKYH------
>chimp_beta_globin gi|55635219|ref|XP_508242.1| PREDICTED: hypothetical protein [Pan troglodytes]
MVHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
FGKEFTPPVQAAYQKVVAGVANALAHKYH------
>dog_beta_globin gi|57113367|ref|XP_537902.1| PREDICTED: similar to beta globin [Canis familiaris]
MVHLTAEEKSLVSGLWGKV--NVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVMSN
AKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHH
FGKEFTPQVQAAYQKVVAGVANALAHKYH------
>dog_beta_globin_isoform gi|73988172|ref|XP_850823.1| PREDICTED: similar to beta globin isoform 1 [Canis familiaris]
MVHLTAEEKSLVSGLWGKV--NVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVMSN
AKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHH
FGKEFTPQVQAAYQKVVAGVANALAHKYH------
>human_ beta_globin gi|4504349|ref|NP_000509.1| [Homo sapiens]
MVHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
FGKEFTPPVQAAYQKVVAGVANALAHKYH------
>chicken_myoglobin gi|50728806|ref|XP_416292.1| PREDICTED: similar to Myoglobin [Gallus gallus]
-MGLSDQEWQQVLTIWGKVEADIAGHGHEVLMRLFHDHPETLDRFDKFKGLKTPDQMKGS
EDLKKHGATVLTQLGKILKQKGNHESELKPLAQTHATKHKIPVKYLEFISEVIIKVIAEK
HAADFGADSQAAMKKALELFRNDMASKYKEFGFQG
>chimp_myoglobin gi|114686150|ref|XP_001156532.1| PREDICTED: similar to Myoglobin isoform 4 [Pan troglodytes]
-MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKAS
EDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLHSK
HPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
>dog_myoglobin gi|73969214|ref|XP_850735.1| PREDICTED: similar to Myoglobin isoform 1 [Canis familiaris]
-MGLSDGEWQLVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGS
EDLKKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSK
HSGDFHADTEAAMKKALELFRNDIAAKYKELGFQG
>human_myoglobin gi|4885477|ref|NP_005359.1| myoglobin [Homo sapiens]
-MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKAS
EDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSK
HPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
>mouse_myoglobin gi|21359820|ref|NP_038621.2| myoglobin [Mus musculus]
-MGLSDGEWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGS
EDLKKHGCTVLTALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKR
HSGDFGADAQGAMSKALELFRNDIAAKYKELGFQG
>rat_myoglobin gi|11024650|ref|NP_067599.1| myoglobin [Rattus norvegicus]
-MGLSDGEWQMVLNIWGKVEGDLAGHGQEVLISLFKAHPETLEKFDKFKNLKSEEEMKSS
EDLKKHGCTVLTALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEVIIQVLKKR
YSGDFGADAQGAMSKALELFRNDIAAKYKELGFQG