Web document 4.4. Examples of repetitive DNA and protein sequences.

 

>gi|124206411|gb|AAWT01015407.1| Schmidtea mediterranea strain S2F2 S_mediterranea_3.1_Cont22127.1, whole genome shotgun sequence
ATAATAATAATAATAATAATAATAATATTATTATTATTATAAGAACTTCTTTTGTTTTTCACCTCTGATT
TCTTTTAAGTCACATAATATTATTATTATTATTATTATTATTATTATTATTATTAAATATATATTTAAAT
AACTTTTCTCTAATTTAAAATTTTATTTATATAAATATTATAATTTTTATTTATATTATAATTTTTTAAA
AAATAATGTAATTTAAAAATTCAATTATTTTAATAATATTTAAAAAAAGATTTTTT

 

>gi|124209692|gb|AAWT01012126.1| Schmidtea mediterranea strain S2F2 S_mediterranea_3.1_Cont20720.1, whole genome shotgun sequence
TATTTATTTTTCTTAATTTTTTAATATTAATTTTATTAAATTTCTATTTTTATTTTTTACTAATTCTTAT
TCTACTCACCTCCTCCCCCTATATATTTTCTAAACCTTATTTTTCAACGTTTTCCCNTTTTTATATTTTT
ACTTTATTTTTCTATATATTTTTCATACAAAATTTATTAATTATTTTTTTTAATTAATTATTTTATTTTT
TATTTTATTTTAATTAATGTTTTTATTATATTTTTAATTTTTATTTACTATACTTTCTTTTTTTACAAAT
AACCATTTTCATAATTCTTTAACATTACTTTTTTTTTTTAATAATTACTTATATCCCAACACTATAAAAT
ACCCCTATCAATTTTTTATCAATACCCAATTCAAACCATTTTTATTTTATCCCTATATTTACTTATAAAA
AATATTAAAACC

 

>gi|19629008|gb|AAAB01015923.1| Anopheles gambiae str. PEST CRA_x9P1GAUTQMB, whole genome shotgun sequence
TTTTTTGAGTTTTTGAGTTTGAAAAAGTGAGTTTTTTGAGTTTTTGAGTTTGAAAAAGTGAGTTTTTTGA
GTTTTTTGAGTTTGAAAAAGTGAGTTTTTTGAGTTTTTTGAGTTTTTTGAGTTTGAAAAAGTAAGTTTTT
TGAGTTTTTTGAGTTTGAAAAAGTGAGTTTTTTGAGTTTTTGAGTTAGAAAAAGTGAGTTTTTTGAGTTT
TTTGAGTTTGAAAAAGTGAGTTTTTTGAGTTTTTTGAGTTTGAAAAAGTGAGTTTTTTGAGTTTTTGAGT
TTGAAAAAGTGAGTTTTTTGAGTTTTTTGAGTTTATTGAGTTTGAAAAAGTGAGTTTTTTGAGTTTTTTG
AGTTTGAAAAAGTGAGTTTTTTGAGTTTTTTGA

 

 

>gi|19628912|gb|AAAB01015827.1| Anopheles gambiae str. PEST CRA_x9P1GAUTQJB, whole genome shotgun sequence
TCCCTCCTTCCCTCCTTCCCTCTTTCCCTCTTTCCCTCTTTCCGTCTTTGCCTCTTTCCCTCTTTCCCTC
TTTCCCTCTTTCCCTCTTTGCCTCTTTCCCTCGTTCCCTCCTTCCCTCCTTCCGTCTTTCCCTCTTTCCC
TCTTTCCCTCTTTCCCTCTTTCCCTCTTTCCCTCTTTCCCTCTTTCCCTCTTTCCCTCCTTCCCTCTTTC
CCTCTTTCCCTCCTTCCCTCTTTCCCTCCTTCCCTCCTTCCCTCTTTCCCTCTTTCCCTCTTTCCCTCTT
TCCCTCTTTCCCTCTTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTTTTTCCCTCCTTCCCTCCTTCCCTC
CTTCCCTATTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCTTTCCCTCTTTCCCTCCTTCCC
TCCTTCCCTCTTTCCCTCCTTCGCTCTTTCCCTCTTTCCCTCTTTCCCTCTTTCC

 

 

>gi|19628183|gb|AAAB01015098.1| Anopheles gambiae str. PEST CRA_x9P1GAUTPTJ, whole genome shotgun sequence
AATGGTTGTGTTGTCTCTCAGGTAGCGAGATCGAAAATGCATGGACTTTGTAGCCGCAGCGGATGAAAAT
GTACCCATCAGAATCAAATAGTTTTGGAGTTTCCAAACGCACGCACACACACAAACACACAAACACGCGC
GCGCAAACTCGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACAGACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACACACACGTACGCGCGCGCGCGC
GCGCACACATGTATT

 

 

>gi|19627653|gb|AAAB01014568.1| Anopheles gambiae str. PEST CRA_x9P1GAUTPB0, whole genome shotgun sequence
CGCTGCATTTTTGAGAAGAAGGAAACCGGAATGAACACGGCATTGGACTTACCATGCCGGTGCAATATGG
CTGCCAACAGAATCGTGTTCGTACAGTATCGGACATAAAGATAGAACCCTGGTGTTTTCAACGCACCTTG
CACTTGTTTTACCACGTTACTTGTGTTTGTGTGTGTGTGTGTGTGTGTATGTGTGTATAAGTGTGTGTGT
GAGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGTAGTAGAAAGAGAG

 

 

>gi|20462490|gb|BQ261721.1|BQ261721 fz68c03.y1 Sugano SJD adult male Danio rerio cDNA clone IMAGE:5913581 5' similar to contains element MSR1 repetitive element ;, mRNA sequence
CGTCTCTTGCTGTCTGTCTGCTCAGATAAACCATCCACCCGTCGCAATGGCTGTCCGCGGTTTTCTGCCT
CTGCTCTTTATCCTGCTGAGTGGTATTGTTCATGCTGATGATATGATGACATCACCACTGCCCTCAACAG
CAGAGCTCAAAACAGCCAGCCTCCCCCTAGTCATCCAGACTACTTCATCTACTTCATCATCTACTACAAC
CACCTCCAGACCCTCTTCAACTTCCACTCATTCCACTCTGACTACAGAACCTGCAGCTAAAACCACTACT
GCACGCACCACAGTTACCACTTCAGCTCCAACTTCCACACAAAGCACTAGTAGTTCTAGCACCAGTGCTA
CAGTTACCACATTAGCTCCAACTACCACAGGACACAACACAACCAATTCTACCACAGAACCGCCAACTAC
CACAGGACACAACACGACAAATTCTACTACAGATGCGCCAACCACCACACACACCAATGCTACAGGAGCC
CC

 

 

>gi|881362|gb|U27097.1|SNU27097 Salvelinus namaycush clone SnAluI-41 AluI fragments and DraI/BstEII repetitive element, partial sequence
CTCTCTTTGTTTGGGGGGAGTGGCATGTTCAAAATGAGCAGGAAATCTGATAGCACTGACTCCCTGGCTT
GCTTCTCTCTCTCTCTCCTCTCTTCTCTCTCTCTCCTCTCTTCTCTCTCTCTTCTCTCTCTCTCTCTCTC
TCTGCTCTCTCTCCTCTTCTCTTCTCTTCTCTCTCTCTCTCTCACACACACACTGCTGAAAACAGAGCCA
AGTTTGATAAGATGTAAGTGTGTTAGTCTTTATGAGCTCCATAAATCCCTTAGGCCGGTGCGACTGACTT
GTGCCCGTAGTATGGTGCTCCCATATCGGGCATGGGTGTGGGCAGGCCTTAAAAGTCATTTTCATTCGAT
TTCTGTAGCAGCACCTGGTAACCCAAACTAACATAAGGTGGTGTCAGTAGTGAGGATGCGGACAGACCTT
TATATAAAAGCTCAAAATTGGACATCTCTTCATGTCTGAGATATGGGGAATGCTTCAAAACTGGCATTA

 

 

>gi|50539938|ref|NP_001002435.1| polyglutamine binding protein 1-like [Danio rerio]
MPLPPALLARLAKRGIVKQSDHEAEEEIIAEDYDDNNVDYEATRIESLPSNWYKVFDSACGLPYYWNVET
DLVSWLSPNDPAAVITKAAKKPKGETGHEKGDGHYEKTERDRDRDRERDRDRERDRERDRDRDRDDGRDR
DRDRDRDRDRERDRDRDRDRRMRREDSAPYSKSKRGGSGGGGSRKQQQEEMDPMDPSAYSDAPRGSWSTG
LPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAENTRRLEEEDDDDDD

 

 

>gi|133323|sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest subunit (RPB1)
AGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPG
SPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY
SPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY
TPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN

 

 

>gi|1352317|sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-responsive protein 48) (DDRP 48) (YP 75) (Flocculent-specific protein)
MGLFDKVKQFANSNNNNNDSGNNNQGDYVTKAENMIGEDRVNQFKSKIGEDRFDKMESKVRQQFSNTSIN
DNDSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGS
SNNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSS
NNDSYGSNNDDSYGSNNNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNKN
KSSYGSSSNDDSYGSSNNDDSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNN
DDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNDDSYGSSNRNKNSYGSSNYGSSNNDDSYGSSNRGG
RNQYGGDDDY

 

 

>gi|731172|sp|P17437|XP2_XENLA Skin secretory protein xP2 precursor (Protein APEG)
MNHKLFCVHFLLLILSVCYIQGQDAGGEPAPAEGVAPAPAEGGAPAPAPAEGEAPAPAEGGAPAPAPAEG
AEPAPADGGAPAPAPAEGGAPAPAPAEGGAPAPAPAEGGAPAPAEGGAPAPAPAEGEAPAPAPAEGEAPA
PAPAEGEAPAPAEGEAPAPAPAEVEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPA
PAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPA
PAPAEGEAPAPAEGEAPAPAPAEGEAPAPAPAEGGAPSPAEGGAPAAAPAEGGAPAPAPAPVEVGPKTED
CKGDPFKRTDCGYPGITEGQCKAKGCCFDSSIVGVKWCFFPRTARAQCLFSPGDREDCGYSSITPMECMK
RGCCFDASITGVKWCFHQK

 

 

>gi|134786|sp|P10667|MUA1_XENLA Integumentary mucin A.1 precursor (FIM-A.1) (Preprospasmolysin)
MKHIILCIHFLLMVVGLGQAQDCSVAPNMRVNCGYPTVTEADCRAVGCCFDSSILNTKWCFYNATAGPIK
KLECSGDPTKRIDCGFPRITEKQCILRGCCFDSSISGVKWCYARTVITTPAPDTTTASTTAETTTVPTTP
ETTTVPTTPETTTVPTTPETTTVPTTPETTTVPTTPETTTVPTTPETTTVPTTPETTTVPTTPETTTVPT
TPETTTVPTTPETTTVPTTPETTTASTTAETTTVPTTPETTTEPTTTPTTDTTPPTLPPTPETTTETTTE
TTTETTTETTTETTTETTTAPPPECAADRVDCGYSGITQADCEGKGCIFDSTIPETKWCFYTEAEAPARK
AECTVDPSVRTDCGYPGITDKECREKGCCYDECIPDVIWCFEKAVPVVNS

 

 

>gi|135978|sp|P19934|TOLA_ECOLI Protein tolA
MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGGGGGSSIDAVMVDSGAVVEQYKRMQSQ
ESSAKRSDEQRKMKEQQAAEELREKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAK
AAADAKAKAEADAKAAEEAAKKAAADAKKKAEAEAAKAAAEAQKKAEAAAAALKKKAEAAEAAAAEARKK
AATEAAEKAKAEAEKKAAAEKAAADKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAAAAKA
AAEKAAAAKAAAEADDIFGELSSGKNAPKTGGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSAIES
KFYDASSYAGKTCTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFK
P

 

 

>gi|585239|sp|Q08865|H12_VOLCA Histone H1-II
MASDAPEVKAPKAKTQKKPKTAPTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKT
LSLALKTFVKNGKLVKVKNSYKLSDAQKSKAKAAAKPKAAPKKAAAPKKAAAPKKAKAPKKEGEKKAVKP
KSEKKAAKPKTEKKPKAAKKPKAAKKPAAKKPAAKKPAAKKATPKKAAAPKKAAAPKKAKAATPKKAKAA
TPKKAKAAAKPKAAAKPKAAAKPKAKAAKKA