Web document 3.1.

 

These sequences were used to generate Fig. 3.2. A group of myoglobin orthologs, visualized by multiply aligning the sequences (Chapter 6) then creating a phylogenetic tree by neighbor-joining (Chapter 7). The accession numbers and species names are as follows: human, NP_005359 (Homo sapiens); chimpanzee, XP_001156591 (Pan troglodytes); orangutan, P02148 (Pongo pygmaeus); rhesus monkey, XP_001082347 (Macaca mulatta); pig, NP_999401 (Sus scrofa); common tree shrew, P02165 (Tupaia glis); horse, P68082 (Equus caballus); zebra, P68083 (Equus burchellii); dog, XP_850735 (Canis familiaris); sperm whale, P02185 (Physeter catodon); sheep, P02190 (Ovis aries); rat, NP_067599 (Rattus norvegicus); mouse, NP_038621 (Mus musculus); cow, NP_776306 (Bos taurus); chicken_XP_416292 (Gallus gallus).

 

>human_NP_005359 [Homo sapiens]
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL
TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFR
KDMASNYKELGFQG
>chimpanzee_XP_001156591 [Pan troglodytes]
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL
TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLHSKHPGDFGADAQGAMNKALELFR
KDMASNYKELGFQG
>orangutan_P02148 [Pongo pygmaeus]
MGLSDGEWQLVLNVWGKVEADIPSHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL
TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISESIIQVLQSKHPGDFGADAQGAMNKALELFR
KDMASNYKELGFQG
>rhesus_monkey_XP_001082347 [Macaca mulatta]
MGLSDGEWQLVLNVWGKVEADIPSHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGVTVL
TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLELISESIIQVLQSKHPGDFGADAQGAMNKALELFR
NDMAAKYKELGFQG
>pig_NP_999401 [Sus scrofa]
MGLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTVL
TALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFR
NDMAAKYKELGFQG
>common_tree_shrew_P02165 [Tupaia glis]
MGLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKTEDEMKASEDLKKHGNTVL
SALGGILKKKGQHEAEIKPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQAAMSKALELFR
NDIAAKYKELGFQG
>horse_P68082 [Equus caballus]
MGLSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVL
TALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGDFGADAQGAMTKALELFR
NDIAAKYKELGFQG
>zebra_P68083 [Equus burchellii]
MGLSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVL
TALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGDFGADAQGAMTKALELFR
NDIAAKYKELGFQG
>dog_XP_850735 [Canis familiaris]
MGLSDGEWQLVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDLKKHGNTVL
TALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSGDFHADTEAAMKKALELFR
NDIAAKYKELGFQG
>sperm_whale_P02185 [Physeter catodon]
MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVL
TALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFR
KDIAAKYKELGYQG
>sheep_P02190 [Ovis aries]
MGLSDGEWQLVLNAWGKVEADVAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVL
TALGGILKKKGHHEAEVKHLAESHANKHKIPVKYLEFISDAIIHVLHAKHPSDFGADAQGAMSKALELFR
NDMAAQYKVLGFQG
>rat_NP_067599 [Rattus norvegicus]
MGLSDGEWQMVLNIWGKVEGDLAGHGQEVLISLFKAHPETLEKFDKFKNLKSEEEMKSSEDLKKHGCTVL
TALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEVIIQVLKKRYSGDFGADAQGAMSKALELFR
NDIAAKYKELGFQG
>mouse_NP_038621 [Mus musculus]
MGLSDGEWQLVLNVWGKVEADLAGHGQEVLIGLFKTHPETLDKFDKFKNLKSEEDMKGSEDLKKHGCTVL
TALGTILKKKGQHAAEIQPLAQSHATKHKIPVKYLEFISEIIIEVLKKRHSGDFGADAQGAMSKALELFR
NDIAAKYKELGFQG
>cow_NP_776306 [Bos taurus]
MGLSDGEWQLVLNAWGKVEADVAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGNTVL
TALGGILKKKGHHEAEVKHLAESHANKHKIPVKYLEFISDAIIHVLHAKHPSDFGADAQAAMSKALELFR
NDMAAQYKVLGFHG
>chicken_XP_416292 [Gallus gallus]
MGLSDQEWQQVLTIWGKVEADIAGHGHEVLMRLFHDHPETLDRFDKFKGLKTPDQMKGSEDLKKHGATVL
TQLGKILKQKGNHESELKPLAQTHATKHKIPVKYLEFISEVIIKVIAEKHAADFGADSQAAMKKALELFR
NDMASKYKEFGFQG